2022

Arnald Marcer Arthur D. Chapman, John Wieczorek Xavier Picó Francesc Uribe John Waller Arturo Ariño R F H

Uncertainty matters: ascertaining where specimens in natural history collections come from and its implications for predicting species distributions Journal Article

ECOGRAPHY, 2022 , 2022, ISSN: 0906-7590, 1600-0587.

Abstract | Links | BibTeX | Tags: ecological niche modelling (ENM), ecological research, GBIF, georeferencing, natural history collections, preserved specimens, species distribution modelling (SDM), Uncertainty

Arnald Marcer Agustí Escobar, Víctor Garcia-Font Francesc Uribe

Ali-Bey - an open collaborative georeferencing web application Journal Article

2022.

Links | BibTeX | Tags: collaborative database, digital specimens, georeferencing, natural history collections, site name versioning, traceability, web application

2021

Marcer Arnald; Groom, Quentin; Haston Elspeth; Uribe Francesc

Natural History Collections Georeferencing Survey Report. Current georeferencing practices across institutions worldwide. Journal Article

2021.

Links | BibTeX | Tags: Botanical Garden, Data quality, georeferencing, Herbaria, Natural History Collections (NHC), Natural History Institutions Museum, Uncertainty

2020

Arnald Marcer Elspeth Haston, Quentin Groom Arturo Ariño Arthur Chapman Torkild Bakken Paul Braun Mathias Dillen Marcus Ernst Agustí Escobar David Fichtmüller Laurence Livermore Nicky Nicolson Kaloust Paragamian Deborah Paul Lars Pettersson Sarah Phillips Jack Plummer Heimo Rainer Isabel Rey Tim Robertson Dominik Röpert Joaquim Santos Francesc Uribe John Waller John Wieczorek H D B R

Quality issues in georeferencing: From physical collections to digital data repositories for ecological research Journal Article

2020.

Links | BibTeX | Tags: eco-evolutionary research, georeferencing, global biodiversity information facility, natural history collections, uncertainty workshop

Hardy, Helen; Knapp, Sandra; Allan, Louise E; Berger, Frederik; Dixey, Katherine; Döme, Bernadette; Gagnier, Pierre-Yves; Frank, Jiri; Margaret Haston, Elspeth; Holstein, Joachim; Kiel, Steffen; Marschler, Maria; Mergen, Patricia; Phillips, Sarah; Rabinovich, Rivka; Chillón, Begoña Sanchez; V Sorensen, Martin; Thines, Marco; Trekels, Maarten; Vogt, Robert; Wilson, Scott; Wiltschke-Schrotta, Karin

SYNTHESYS+ Virtual Access - Report on the Ideas Call (October to November 2019) Journal Article

Research Ideas and Outcomes, 6 , pp. e50354, 2020.

Abstract | Links | BibTeX | Tags: access, collaboration, digital data, digitisation, digitization, natural history collections, virtual data

Harjes, Janno; Link, Anton; Weibulat, Tanja; Triebel, Dagmar; Rambold, Gerhard

FAIR digital objects in environmental and life sciences should comprise workflow operation design data and method information for repeatability of study setups and reproducibility of results Journal Article

Database, 2020 , 2020, ISSN: 1758-0463, (baaa059).

Abstract | Links | BibTeX | Tags:

Addink, Wouter; R Hardisty, Alex

‘openDS’ – Progress on the New Standard for Digital Specimens Journal Article

Biodiversity Information Science and Standards, 4 , pp. e59338, 2020.

Abstract | Links | BibTeX | Tags:

Woodburn, Matt; Paul, Deborah L; Addink, Wouter; Baskauf, Steven J; Blum, Stanley; Chapman, Cat; Grant, Sharon; Groom, Quentin; Jones, Janeen; Petersen, Mareike; Raes, Niels; Smith, David; Tilley, Laura; Trekels, Maarten; Trizna, Michael; Ulate, William; Vincent, Sarah; Walls, Ramona; Webbink, Kate; Zermoglio, Paula

Unity in Variety: Developing a collection description standard by consensus Journal Article

Biodiversity Information Science and Standards, 4 , pp. e59233, 2020.

Abstract | Links | BibTeX | Tags:

2019

Addink, Wouter; Koureas, Dimitrios; Casino Rubio, Ana

DiSSCo as a New Regional Model for Scientific Collections in Europe Journal Article

Biodiversity Information Science and Standards, 3 , pp. e37502, 2019.

Abstract | Links | BibTeX | Tags: DiSSCo, Europe, natural history, research infrastructures, RI, scientific collections, specimens

Casino, Ana; Raes, Niels; Addink, Wouter; Woodburn, Matt

Collections Digitization and Assessment Dashboard, a Tool for Supporting Informed Decisions Journal Article

Biodiversity Information Science and Standards, 3 , pp. e37505, 2019.

Abstract | Links | BibTeX | Tags: alignment, biodiversity and geodiversity, dashboard, digitization, DiSSCo, high-level information, informed decision-making, institutional description, mechanisms, natural science collections, research infrastructure, tools, visualization

B Georgiev, Boyko; Casino, Ana; Voreadou, Catherina

Training Taxonomists for the Digital World: Are we prepared? Journal Article

Biodiversity Information Science and Standards, 3 , pp. e36106, 2019.

Abstract | Links | BibTeX | Tags: capacity building, Digital knowledge, digital skills, DiSSCo, education, MOBILISE, natural history collections, research, taxonomy, training, young researchers

J. Groom, Quentin; Besombes, Chloé; Brown, Josh; Chagnoux, Simon; Georgiev, Teodor; Kearney, Nicole; Marcer, Arnald; Nicolson, Nicky; Page, Roderic; Phillips, Sarah; Rainer, Heimo; Riccardi, Greg; Röpert, Dominik; Peter Shorthouse, David; Stoev, Pavel; Margaret Haston, Elspeth

Progress in Authority Management of People Names for Collections Journal Article

Biodiversity Information Science and Standards, 3 , pp. e35074, 2019.

Abstract | Links | BibTeX | Tags: authority file, identifer, ORCID, PID, VIAF, Wikidata

Frick, Holger; A Stieger, Pia; Scheidegger, Christoph

SwissCollNet – A National Initiative for Natural History Collections in Switzerland Journal Article

Biodiversity Information Science and Standards, 3 , pp. e37188, 2019.

Abstract | Links | BibTeX | Tags: data management, digitisation, educational potential, scientific potential, standards, strategy

Ball-Damerow, Joan E; Brenskelle, Laura; Barve, Narayani; Soltis, Pamela S; Sierwald, Petra; Bieler, Rüdiger; LaFrance, Raphael; Ariño, Arturo H; Guralnick, Robert P

Research applications of primary biodiversity databases in the digital age Journal Article

PLOS ONE, 14 (9), pp. 1-26, 2019.

Abstract | Links | BibTeX | Tags:

Galicia, David; Amezcua, Ana; Baquero, Enrique; Cancellario, Tommaso; Chaves, Angel; Biurrun, Gabriel De; Escribano, Nora; Fernández-Eslava, Blanca; González-Alonso, Mónica; Hernández-Soto, Rubén; Ibáñez, Ricardo; Imas, María; Miqueleiz, Imanol; Miranda, Rafael; A Rodeles, Amaia; Valerio, Mercedes; Ariño, Arturo H

Investment in the Long-Tail of Biodiversity Data: From local research to global knowledge Journal Article

Biodiversity Information Science and Standards, 3 , pp. e37310, 2019.

Abstract | Links | BibTeX | Tags: investment, local biodiversity, long-tail biodiversity, resource allocation, staff training

Escribano, Nora; Galicia, David; Ariño, Arturo H

Game of Tops: Trends in GBIF’s Community of Users Journal Article

Biodiversity Information Science and Standards, 3 , pp. e37187, 2019.

Abstract | Links | BibTeX | Tags: biodiversity, community structure, data users, GBIF, research trends

Theeten, Franck; Adam, Marielle; Vandenberghe, Thomas; Dillen, Mathias; Semal, Patrick; Scory, Serge; Herpers, Jean-Marc; den Spiegel, Didier Van; Mergen, Patricia; Smirnova, Larissa; Engledow, Henry; Casino, Ana; Gödderz, Karsten

NaturalHeritage: Bridging Belgian natural history collections Journal Article

Biodiversity Information Science and Standards, 3 , pp. e37854, 2019.

Abstract | Links | BibTeX | Tags: data analysis, data quality and cleaning, interoperable databases, natural history collections, search portal, standardisation, webservices

Huybrechts, Pieter; Alonso-Sánchez, Felix; Böttinger, Petra; Dillen, Mathias; Groom, Quentin; Hanquart, Nicole; Koch, Walter; Gordon, Martin; Mergen, Patricia

LinBi: Linking biodiversity and culture information Journal Article

Biodiversity Information Science and Standards, 3 , pp. e37407, 2019.

Abstract | Links | BibTeX | Tags: biodiversity, citizen science, crowdsourcing, digital heritage, Europeana, metadata enrichment

Arvanitidis, Christos; Hollingsworth, Peter; Mergen, Patricia; Semal, Patrick; Keklikoglou, Kleoniki; Chatzinikolaou, Eva; Addnik, Wouter; Smith, Vincent; Koureas, Dimitrios

Combined High-Throughput Imaging and Sequencing: Addressing the collections on demand requirement in SYNTHESYS+ project Journal Article

Biodiversity Information Science and Standards, 3 , pp. e37290, 2019.

Abstract | Links | BibTeX | Tags: DiSCCo, high-throughput imaging, high-throughput sequencing, LifeWatch ERIC, research infrastructures, SYNTHESYS+, virtual laboratories (vLabs), virtual research environments (VREs)

Knapp, Sandra; Vincent, Sarah; Arvanitidis, Christos; Dixey, Katherine; Mergen, Patricia

Access to Natural History Collections – from SYNTHESYS to DiSSCo Journal Article

Biodiversity Information Science and Standards, 3 , pp. e37149, 2019.

Abstract | Links | BibTeX | Tags: access, collections, DiSSCo, physical access, SYNTHESYS+, virtual access

Lecoq, Marie-Elise; Archambeau, Anne-Sophie; Figueira, Rui; Martin, David; Pamerlon, Sophie; Robertson, Tim; Lebbe, Régine Vignes; Villaverde, Cristina

The Living Atlases Community of Practice Journal Article

Biodiversity Information Science and Standards, 3 , pp. e35779, 2019.

Abstract | Links | BibTeX | Tags: ALA, GBIF, Living Atlases

Hardisty, Alex R; Michener, William K; Agosti, Donat; García, Enrique Alonso; Bastin, Lucy; Belbin, Lee; Bowser, Anne; Buttigieg, Pier Luigi; Canhos, Dora A L; Egloff, Willi; Giovanni, Renato De; Figueira, Rui; Groom, Quentin; Guralnick, Robert P; Hobern, Donald; Hugo, Wim; Koureas, Dimitris; Ji, Liqiang; Los, Wouter; Manuel, Jeffrey; Manset, David; Poelen, Jorrit; Saarenmaa, Hannu; Schigel, Dmitry; Uhlir, Paul F; Kissling, Daniel W

The Bari Manifesto: An interoperability framework for essential biodiversity variables Journal Article

Ecological Informatics, 49 , pp. 22 - 31, 2019, ISSN: 1574-9541.

Abstract | Links | BibTeX | Tags: Cyberinfrastructure, Data products, E-infrastructure, Essential biodiversity variables, Informatics, Interoperability

M Haston, Elspeth; Mitchell, Lorna

People: From a Collection Manager's Viewpoint Journal Article

Biodiversity Information Science and Standards, 3 , pp. e35709, 2019.

Abstract | Links | BibTeX | Tags:

Marcer, Arnald; M. Haston, Elspeth; Groom, Quentin; Picó, Xavier F; Escobar, Agustí; Uribe, Francesc

Uncertain Geo-Uncertainty: Ecological research and public biodiversity data repositories Journal Article

Biodiversity Information Science and Standards, 3 , pp. e34826, 2019.

Abstract | Links | BibTeX | Tags:

Rambold, Gerhard; Yilmaz, Pelin; Harjes, Janno; Klaster, Sabrina; Sanz, Veronica; Link, Anton; Glöckner, Frank Oliver; Triebel, Dagmar

Meta-omics data and collection objects (MOD-CO): a conceptual schema and data model for processing sample data in meta-omics research Journal Article

Database, 2019 , 2019, ISSN: 1758-0463, (baz002).

Abstract | Links | BibTeX | Tags:

de la Hidalga, Abraham Nieva; Cazenave, Nicolas; Agosti, Donat; Wu, Zhengzhe; Dillen, Mathias; H Nielsen, Lars

Use of European Open Science Cloud and National e-Infrastructures for the Long-Term Storage of Digitised Assets from Natural History Collections Journal Article

Biodiversity Information Science and Standards, 3 , pp. e37164, 2019.

Abstract | Links | BibTeX | Tags:

Marcer, Arnald; Escobar, Agustí; Díaz, Anna; Uribe, Francesc

Towards a Federated List of Versioned Georeferenced Site Names: A local experience Journal Article

Biodiversity Information Science and Standards, 3 , pp. e37079, 2019.

Abstract | Links | BibTeX | Tags:

M. Weigand, Alexander; Bouchez, Agnès; Boets, Pieter; Bruce, Kat; Ciampor, Fedor; Ekrem, Torbjørn; Fontaneto, Diego; Franc, Alain; Hering, Daniel; Kahlert, Maria; Keskin, Emre; Mergen, Patricia; Pawlowski, Jan; Kueckmann, Sarah; Leese, Florian

Taming the Wild West of Molecular Tools Application in Aquatic Research and Biomonitoring Journal Article

Biodiversity Information Science and Standards, 3 , pp. e37215, 2019.

Abstract | Links | BibTeX | Tags:

2018

H. Ariño, Arturo

Putting your Finger upon the Simplest Data Journal Article

Biodiversity Information Science and Standards, 2 , pp. e26300, 2018.

Abstract | Links | BibTeX | Tags: bias, digitally accessible knowledge (DAK), digitization, Natural History Collections (NHC), primary biodiversity data records (PBR), trends

Güntsch, Anton; Groom, Quentin; Hyam, Roger; Chagnoux, Simon; Röpert, Dominik; Berendsohn, Walter G; Casino, Ana; Droege, Gabriele; Gerritsen, Willfred; Holetschek, Jörg; Marhold, Karol; Mergen, Patricia; Rainer, Heimo; Stuart Smith, Vincent; Triebel, Dagmar

Standardised Globally Unique Specimen Identifiers Journal Article

Biodiversity Information Science and Standards, 2 , pp. e26658, 2018.

Abstract | Links | BibTeX | Tags: collection management, linked open data, specimen identifier

Mergen, Patricia; Meissner, Kristian; Hering, Daniel; Leese, Florian; Bouchez, Agnès; Weigand, Alexander; Kueckmann, Sarah

DNAqua-Net or how to navigate on the stormy waters of standards and legislations Journal Article

Biodiversity Information Science and Standards, 2 , pp. e25953, 2018.

Abstract | Links | BibTeX | Tags: Bioassessments, e-DNA, GDPR, legislation, metagenomics, Nagoya Protocol, standards, water quality

Silva, Ana Serra; Groz, Maria Pitta; Leandro, Paula; Assis, Carlos A; Figueira, Rui

Ichthyological collection of the Museu Oceanográfico D. Carlos I Journal Article

ZooKeys, 752 , pp. 137-148, 2018, ISSN: 1313-2989.

Abstract | Links | BibTeX | Tags: Actinopterygii, Animalia, D. Carlos I, Elasmobranchii, Holocephali, Myxini, Natural History collection, Occurrence, Petromyzonti, Portugal

2017

Monteiro, Miguel; Figueira, Rui; Melo, Martim; Mills, Michael Stuart Lyne; Beja, Pedro; Bastos-Silveira, Cristiane; Ramos, Manuela; Rodrigues, Diana; Neves, Isabel Queirós; Consciência, Susana; Reino, Luís

The collection of birds from Mozambique at the Instituto de Investigação Científica Tropical of the University of Lisbon (Portugal) Journal Article

ZooKeys, 708 , pp. 139-152, 2017, ISSN: 1313-2989.

Abstract | Links | BibTeX | Tags: Animalia, Aves, Biodiversity databases, Chordata, museum, southern Africa, species occurrence data, specimen

2016

Dauby, Gilles; Zaiss, Rainer; Blach-Overgaard, Anne; Catarino, Luís; Damen, Theo; Deblauwe, Vincent; Dessein, Steven; Dransfield, John; Droissart, Vincent; Duarte, Maria Cristina; Engledow, Henry; Fadeur, Geoffrey; Figueira, Rui; Gereau, Roy E; Hardy, Olivier J; Harris, David J; de Heij, Janneke; Janssens, Steven; Klomberg, Yannick; Ley, Alexandra C; MacKinder, Barbara A; Meerts, Pierre; van de Poel, Jeike L; Sonké, Bonaventure; Sosef, Marc S M; Stévart, Tariq; Stoffelen, Piet; Svenning, Jens-Christian; Sepulchre, Pierre; van der Burgt, Xander; Wieringa, Jan J; Couvreur, Thomas L P

RAINBIO: a mega-database of tropical African vascular plants distributions Journal Article

PhytoKeys, 74 , pp. 1-18, 2016, ISSN: 1314-2011.

Abstract | Links | BibTeX | Tags: biodiversity assessment, cultivated species, digitization, georeferencing, habit, Herbarium specimens, native species, taxonomic backbone, tropical forests

2014

Romeiras, Maria M; Figueira, Rui; Duarte, Maria Cristina; Beja, Pedro; Darbyshire, Iain

Documenting Biogeographical Patterns of African Timber Species Using Herbarium Records: A Conservation Perspective Based on Native Trees from Angola Journal Article

PLOS ONE, 9 (7), pp. 1-11, 2014.

Abstract | Links | BibTeX | Tags:

ResearchGate Link : https://www.researchgate.net/project/MOBILISE-COST-Action-CA17106-Mobilising-Data-Policies-and-Experts-in-Scientific-Collections